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Accepted for/Published in: Journal of Medical Internet Research

Date Submitted: Jan 23, 2026
Open Peer Review Period: Jan 25, 2026 - Mar 22, 2026
Date Accepted: Jun 23, 2026
(closed for review but you can still tweet)

The final, peer-reviewed published version of this preprint can be found here:

Novel Musculoskeletal Hypotheses in the Armed Services Trauma and Rehabilitation Outcome (ADVANCE) Cohort: Development and Application of Sparse Group Factor Analysis Methodology

Watson FC, Ferreira FS, Kadirvelu B, Bennett AN, Faisal AA, Graham N, Kemp H, Cullinan P, Boos C, Fear NT, Bull AM

Novel Musculoskeletal Hypotheses in the Armed Services Trauma and Rehabilitation Outcome (ADVANCE) Cohort: Development and Application of Sparse Group Factor Analysis Methodology

J Med Internet Res 2026;28:e91958

DOI: 10.2196/91958

PMID: 42478990

Novel musculoskeletal hypotheses in the ADVANCE cohort: development and application of sparse Group Factor Analysis methodology

  • Fraje CE Watson; 
  • Fabio S Ferreira; 
  • Balasundaram Kadirvelu; 
  • Alex N Bennett; 
  • Aldo A Faisal; 
  • Neil Graham; 
  • Harriet Kemp; 
  • Paul Cullinan; 
  • Christopher Boos; 
  • Nicola T Fear; 
  • Anthony MJ Bull

ABSTRACT

Background:

Musculoskeletal conditions are a leading global cause of disability, yet the factors influencing long-term musculoskeletal health, particularly following trauma, remain incompletely understood. Machine learning could be applied to identify previously unknown patterns in large-scale multimodal datasets.

Objective:

Test the ability of a new sparse Group Factor Analysis method to uncover hidden patterns in large-scale multi-modal datasets and generate testable, clinically relevant hypotheses.

Methods:

This study applies sparse Group Factor Analysis, a hierarchical unsupervised machine learning method, to the ADVANCE cohort—a longitudinal dataset of 1445 UK Afghanistan War servicemen—to identify latent structures in multimodal clinical data. Study 1 validated the approach by rediscovering known group-level patterns between combat-injured and non-injured participants, including poorer outcomes in pain, mobility, and bone health among those with lower limb loss. Study 2 explored the Injured, non-amputee subgroup without prespecified labels to identify new hypothesis-generating clusters that could subsequently be tested using standard hypothesis testing methods.

Results:

A subgroup of 125 individuals with worse musculoskeletal outcomes was uncovered. This group had greater body mass, higher injury severity, and a higher prevalence of head injury. These findings led to a novel hypothesis: that head injury, including potential traumatic brain injury, is associated with long-term musculoskeletal deterioration. This hypothesis is supported by literature in both athletic and military populations and will be tested in follow-up analyses.

Conclusions:

Our findings demonstrate how sparse Group Factor Analysis, combined with clinical insight, can uncover hidden patterns in large-scale datasets and generate testable, clinically relevant hypotheses that inform prevention, treatment, and rehabilitation strategies.


 Citation

Please cite as:

Watson FC, Ferreira FS, Kadirvelu B, Bennett AN, Faisal AA, Graham N, Kemp H, Cullinan P, Boos C, Fear NT, Bull AM

Novel Musculoskeletal Hypotheses in the Armed Services Trauma and Rehabilitation Outcome (ADVANCE) Cohort: Development and Application of Sparse Group Factor Analysis Methodology

J Med Internet Res 2026;28:e91958

DOI: 10.2196/91958

PMID: 42478990

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