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Accepted for/Published in: Journal of Medical Internet Research

Date Submitted: May 19, 2025
Date Accepted: Aug 14, 2025

The final, peer-reviewed published version of this preprint can be found here:

Beyond Comparing Machine Learning and Logistic Regression in Clinical Prediction Modelling: Shifting from Model Debate to Data Quality

Hu Y, Zhang X, Slavin V, Belsti Y, Tiruneh SA, Callander E, Enticott J

Beyond Comparing Machine Learning and Logistic Regression in Clinical Prediction Modelling: Shifting from Model Debate to Data Quality

J Med Internet Res 2025;27:e77721

DOI: 10.2196/77721

PMID: 41191908

PMCID: 12631085

Warning: This is an author submission that is not peer-reviewed or edited. Preprints - unless they show as "accepted" - should not be relied on to guide clinical practice or health-related behavior and should not be reported in news media as established information.

Beyond Comparing Machine Learning and Logistic Regression: Shift from Model-Centric to Data-Centric Clinical Prediction Modelling

  • Yanan Hu; 
  • Xin Zhang; 
  • Valerie Slavin; 
  • Yitayeh Belsti; 
  • Sofonyas Abebaw Tiruneh; 
  • Emily Callander; 
  • Joanne Enticott

ABSTRACT

The rapid uptake of supervised machine learning (ML) in clinical prediction modelling, particularly for binary outcomes based on tabular data, has prompted debate about its comparative advantage over traditional statistical logistic regression (LR). While ML has demonstrated superiority in unstructured data domains, its performance gains in structured, tabular clinical datasets remain inconsistent and context-dependent. This viewpoint synthesises recent comparative studies and simulation findings to argue that there is no universal best algorithm, its performance depends heavily on dataset characteristics, such as linearity, sample size, number of candidate predictors, and minority class proportion. We advocate for LR as a baseline model in clinical prediction research due to its interpretability and stability, with ML approaches considered only when they show meaningful improvements across multiple performance metrics, particularly clinical utility. Ultimately, we argue that investments in data quality, not model complexity, are more likely to enhance the reliability and utility of clinical prediction models.


 Citation

Please cite as:

Hu Y, Zhang X, Slavin V, Belsti Y, Tiruneh SA, Callander E, Enticott J

Beyond Comparing Machine Learning and Logistic Regression in Clinical Prediction Modelling: Shifting from Model Debate to Data Quality

J Med Internet Res 2025;27:e77721

DOI: 10.2196/77721

PMID: 41191908

PMCID: 12631085

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