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Accepted for/Published in: JMIR Cardio

Date Submitted: Oct 29, 2024
Open Peer Review Period: Nov 5, 2024 - Dec 31, 2024
Date Accepted: Feb 24, 2025
(closed for review but you can still tweet)

The final, peer-reviewed published version of this preprint can be found here:

Machine Learning Model for Predicting Coronary Heart Disease Risk: Development and Validation Using Insights From a Japanese Population–Based Study

Vu T, Kokubo Y, Inoue M, Yamamoto M, Mohsen A, Martin-Morales A, Dawadi R, Inoue T, Ting TJ, Yoshizaki M, Watanabe N, Kuriya Y, Matsumoto C, Arafa A, Nakao YM, Kato Y, Teramoto M, Araki M

Machine Learning Model for Predicting Coronary Heart Disease Risk: Development and Validation Using Insights From a Japanese Population–Based Study

JMIR Cardio 2025;9:e68066

DOI: 10.2196/68066

PMID: 40354648

PMCID: 12088616

Warning: This is an author submission that is not peer-reviewed or edited. Preprints - unless they show as "accepted" - should not be relied on to guide clinical practice or health-related behavior and should not be reported in news media as established information.

Machine Learning-Based Prediction of Coronary Heart Disease: Comprehensive Insights from the Suita Study

  • Thien Vu; 
  • Yoshihiro Kokubo; 
  • Mai Inoue; 
  • Masaki Yamamoto; 
  • Attayeb Mohsen; 
  • Agustin Martin-Morales; 
  • Research Dawadi; 
  • Takao Inoue; 
  • Tay Jie Ting; 
  • Mari Yoshizaki; 
  • Naoki Watanabe; 
  • Yuki Kuriya; 
  • Chisa Matsumoto; 
  • Ahmed Arafa; 
  • Yoko M Nakao; 
  • Yuka Kato; 
  • Masayuki Teramoto; 
  • Michihiro Araki

ABSTRACT

Background:

Coronary heart disease (CHD) is a major cause of morbidity and mortality worldwide. Identifying key risk factors is essential for effective risk assessment and prevention. Machine learning (ML) offers advanced methods for analyzing complex datasets, revealing novel predictors of CHD beyond traditional models.

Objective:

This study aims to evaluate the contribution of various risk factors to CHD, focusing on both established and novel markers using machine learning techniques.

Methods:

The study recruited 7,672 participants aged 30 to 84 years from Suita City, Japan, between 1989 and 1999. Over an average of 15 years, participants were monitored for cardiovascular events. Five ML models—Random Forest (RF), XGBoost, Support Vector Machine (SVM), Logistic Regression (LR), and LightGBM—were used. The optimal model was identified based on accuracy, sensitivity, specificity, and AUC. SHapley Additive exPlanations (SHAP) were then employed to explore the contribution of various risk factors to CHD.

Results:

RF achieved the highest AUC (95% CI) of 0.94 (0.93-0.96), outperforming LR, SVM, XGBoost, and LightGBM. SHAP on the best model identified the top CHD predictors. Intima-media thickness of common carotid artery (IMT_cMax) was identified as the strongest predictor of CHD, highlighting the importance of arterial health. Systolic and diastolic blood pressure, along with lipid profiles (non-HDL cholesterol, HDL cholesterol, and triglycerides), were closely associated with CHD incidence. eGFR underscored the link between renal function and CHD. Novel insights included the impact of lower calcium levels, systemic inflammation (elevated WBC counts), fructosamine levels, and obesity-related factor (body fat percentage). A protective effect in females indicated the need for sex-specific CHD management strategies.

Conclusions:

ML, particularly the RF model combined with SHAP, effectively identified key risk factors for CHD, including arterial health, blood pressure, lipid profiles, renal function, and novel markers. These findings support a multifactorial approach to CHD risk assessment.


 Citation

Please cite as:

Vu T, Kokubo Y, Inoue M, Yamamoto M, Mohsen A, Martin-Morales A, Dawadi R, Inoue T, Ting TJ, Yoshizaki M, Watanabe N, Kuriya Y, Matsumoto C, Arafa A, Nakao YM, Kato Y, Teramoto M, Araki M

Machine Learning Model for Predicting Coronary Heart Disease Risk: Development and Validation Using Insights From a Japanese Population–Based Study

JMIR Cardio 2025;9:e68066

DOI: 10.2196/68066

PMID: 40354648

PMCID: 12088616

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