Accepted for/Published in: Journal of Medical Internet Research
Date Submitted: Oct 10, 2024
Open Peer Review Period: Oct 15, 2024 - Dec 10, 2024
Date Accepted: Mar 16, 2025
(closed for review but you can still tweet)
Warning: This is an author submission that is not peer-reviewed or edited. Preprints - unless they show as "accepted" - should not be relied on to guide clinical practice or health-related behavior and should not be reported in news media as established information.
Data interoperability in context: the importance of open source implementations when choosing open standards
ABSTRACT
In response to the proposal of Tsafnat et al. to converge towards three open health data standards, this viewpoint provides a critical reflection on the proposed alignment of using openEHR, FHIR and OMOP as the default standards for clinical care and administration, data exchange and longitudinal analysis, respectively. We argue that open standards are a necessary but not sufficient condition to achieve health data interoperability. The ecosystem of open source implementations needs to be considered when choosing an appropriate standard for a given context. We discuss two specific contexts, namely standardization of i) health data for federated learning, and ii) health data sharing in low- and middle income countries (LMICs). Specific design principles, practical considerations and implementation choices for these two contexts are described, based on ongoing work in both areas. In the case of federated learning, we observe convergence towards OMOP and FHIR, where the two standards can effectively be used side-by-side given the availibility of mediators between the two. In the case of health information exchanges in LMICs, we see a strong convergence towards FHIR as the primary standard, with as yet limited adoption of OMOP and openEHR. We propose practical guidelines for context-specific adaptation of open standards.
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Copyright
© The authors. All rights reserved. This is a privileged document currently under peer-review/community review (or an accepted/rejected manuscript). Authors have provided JMIR Publications with an exclusive license to publish this preprint on it's website for review and ahead-of-print citation purposes only. While the final peer-reviewed paper may be licensed under a cc-by license on publication, at this stage authors and publisher expressively prohibit redistribution of this draft paper other than for review purposes.