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Accepted for/Published in: JMIR Medical Informatics

Date Submitted: Feb 7, 2024
Date Accepted: Jul 16, 2024

The final, peer-reviewed published version of this preprint can be found here:

Automated Identification of Postoperative Infections to Allow Prediction and Surveillance Based on Electronic Health Record Data: Scoping Review

van der Meijden SL, van Boekel AM, van Goor H, Nelissen RGHH, Schoones JW, Steyerberg EW, Geerts BF, de Boer MGJ, Arbous MS

Automated Identification of Postoperative Infections to Allow Prediction and Surveillance Based on Electronic Health Record Data: Scoping Review

JMIR Med Inform 2024;12:e57195

DOI: 10.2196/57195

PMID: 39255011

PMCID: 11422734

Automated Identification of Postoperative Infections to allow Prediction and Surveillance Based on EHR data: a Scoping Review

  • Siri Lise van der Meijden; 
  • Anna M van Boekel; 
  • H van Goor; 
  • Rob G H H Nelissen; 
  • Jan W Schoones; 
  • Ewout W Steyerberg; 
  • Bart F Geerts; 
  • Mark G J de Boer; 
  • M Sesmu Arbous

ABSTRACT

Background:

Postoperative infections reman a crucial challenge in healthcare, resulting in high morbidity, mortality, and costs. Accurate identification and labeling of patients with postoperative bacterial infections is crucial for developing prediction models, validating biomarkers, and implementing surveillance systems in clinical practice.

Objective:

This scoping review aimed to explore methods for identifying patients with postoperative infections using electronic health record (EHR) data to go beyond the reference standard of manual chart review.

Methods:

We performed a systematic search strategy across PubMed, Embase, Web of Science, the Cochrane Library, and Emcare, targeting studies addressing the prediction and fully automated surveillance of diverse bacterial infections in the postoperative setting. For prediction modeling studies, we assessed the labeling methods used, categorizing them as either manual or automated. We evaluated the different types of electronic health record (EHR) data needed for the surveillance and labeling of postoperative infections, as well as the performance of fully automated surveillance systems compared to manual chart review.

Results:

We identified 75 different methods and definitions used to identify patients with postoperative infections in studies published between 2003 and 2023. Manual labeling was the predominant method in prediction modeling research; 49/75 (65%) of the identified methods use structured data, and 34/75 (45%) use free-text and clinical notes as one of their data sources. Fully automated surveillance systems should be used with caution because the reported positive predictive values (PPVs) are between 0.31 and 0.76.

Conclusions:

As no uniform and reliable methods could be identified for detecting postoperative infections, future research must focus on defining uniform definitions, as well as prioritizing the development of more scalable, automated methods for infection detection using structured EHR data.


 Citation

Please cite as:

van der Meijden SL, van Boekel AM, van Goor H, Nelissen RGHH, Schoones JW, Steyerberg EW, Geerts BF, de Boer MGJ, Arbous MS

Automated Identification of Postoperative Infections to Allow Prediction and Surveillance Based on Electronic Health Record Data: Scoping Review

JMIR Med Inform 2024;12:e57195

DOI: 10.2196/57195

PMID: 39255011

PMCID: 11422734

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