Accepted for/Published in: JMIR AI
Date Submitted: Jan 21, 2024
Open Peer Review Period: Jan 21, 2024 - Mar 17, 2024
Date Accepted: May 1, 2024
(closed for review but you can still tweet)
Development of lung cancer risk prediction machine learning models for equitable learning health system: Retrospective study
ABSTRACT
Background:
A significant proportion of young at-risk patients and nonsmokers are excluded by the current guidelines for lung cancer (LC) screening, resulting in low screening adoption. The vision of the US National Academic Medicine to transform health systems into Learning Health Systems (LHS) holds promise for bringing necessary structural changes to healthcare, thereby addressing the exclusivity and adoption issues of LC screening.
Objective:
This study aims to realize the LHS vision by designing an equitable, machine learning (ML)-enabled LHS unit for LC screening. It focuses on developing an inclusive and practical LC risk prediction model, suitable for initializing the ML-LHS unit. This model aims to empower primary physicians in a clinical research network, linking central hospitals and rural clinics, to routinely deliver risk-based screening for enhancing LC early detection in broader populations.
Methods:
We created a standardized dataset of health factors from 1,397 lung cancer patients and 1,448 control patients, all aged 30 years and older, including both smokers and nonsmokers, from a hospital’s electronic medical record system (EMR). Initially, a data-centric ML approach was employed to create inclusive ML models for risk prediction from all available health factors. Subsequently, a quantitative distribution of LC health factors was utilized in feature engineering to refine the models into a more practical model with fewer variables.
Results:
The initial inclusive 250-variable XGBoost model for LC risk prediction achieved performance metrics of 0.86 recall, 0.90 precision, and 0.89 accuracy. Post feature refinement, a practical 29-variable XGBoost model was developed, displaying performance metrics of 0.80 recall, 0.82 precision, and 0.82 accuracy. This model met the criteria for initializing the ML-LHS unit for risk-based, inclusive LC screening within clinical research networks.
Conclusions:
This study designed an innovative ML-LHS unit for a clinical research network, aiming to sustainably provide inclusive LC screening to all at-risk populations. It developed an inclusive and practical XGBoost model from hospital EMR data, capable of initializing such an ML-LHS unit for community and rural clinics. The anticipated deployment of this ML-LHS unit is expected to significantly improve LC screening rates and early detection among broader populations, including those typically overlooked by existing screening guidelines. Clinical Trial: None
Citation
Request queued. Please wait while the file is being generated. It may take some time.
Copyright
© The authors. All rights reserved. This is a privileged document currently under peer-review/community review (or an accepted/rejected manuscript). Authors have provided JMIR Publications with an exclusive license to publish this preprint on it's website for review and ahead-of-print citation purposes only. While the final peer-reviewed paper may be licensed under a cc-by license on publication, at this stage authors and publisher expressively prohibit redistribution of this draft paper other than for review purposes.