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Accepted for/Published in: JMIR Aging

Date Submitted: Nov 20, 2023
Date Accepted: Jun 2, 2024

The final, peer-reviewed published version of this preprint can be found here:

Self-Explainable Graph Neural Network for Alzheimer Disease and Related Dementias Risk Prediction: Algorithm Development and Validation Study

Hu X, Sun Z, Nian Y, Dang Y, Li F, Feng J, Yu E, Tao C

Self-Explainable Graph Neural Network for Alzheimer Disease and Related Dementias Risk Prediction: Algorithm Development and Validation Study

JMIR Aging 2024;7:e54748

DOI: 10.2196/54748

PMID: 38976869

PMCID: 11263893

Warning: This is an author submission that is not peer-reviewed or edited. Preprints - unless they show as "accepted" - should not be relied on to guide clinical practice or health-related behavior and should not be reported in news media as established information.

Explainable Graph Neural Network for Alzheimer's Disease And Related Dementias Risk Prediction

  • Xinyue Hu; 
  • Zenan Sun; 
  • Yi Nian; 
  • Yifang Dang; 
  • Fang Li; 
  • Jingna Feng; 
  • Evan Yu; 
  • Cui Tao

ABSTRACT

Background:

Alzheimer's disease and related dementias (ADRD) ranks as the sixth leading cause of death in the US, underlining the importance of accurate ADRD risk prediction. While recent advancement in ADRD risk prediction have primarily relied on imaging analysis, yet not all patients undergo medical imaging before an ADRD diagnosis. Merging machine learning with claims data can reveal additional risk factors and uncover interconnections among diverse medical codes.

Objective:

Our goal is to utilize Graph Neural Networks (GNNs) with claims data for ADRD risk prediction. Addressing the lack of human-interpretable reasons behind these predictions, we introduce an innovative method to evaluate relationship importance and its influence on ADRD risk prediction, ensuring comprehensive interpretation.

Methods:

We employed Variationally Regularized Encoder-decoder Graph Neural Network (VGNN) for estimating ADRD likelihood. We created three scenarios to assess the model's efficiency, using Random Forest and Light Gradient Boost Machine as baselines. We further used our relation importance method to clarify the key relationships for ADRD risk prediction.

Results:

VGNN surpassed other baseline models by 10% in the area under the receiver operating characteristic. The integration of the GNN model and relation importance interpretation could potentially play an essential role in providing valuable insight into factors that may contribute to or delay ADRD progression.

Conclusions:

Employing a GNN approach with claims data enhances ADRD risk prediction and provides insights into the impact of interconnected medical code relationships. This methodology not only enables ADRD risk modeling but also shows potential for other image analysis predictions using claims data.


 Citation

Please cite as:

Hu X, Sun Z, Nian Y, Dang Y, Li F, Feng J, Yu E, Tao C

Self-Explainable Graph Neural Network for Alzheimer Disease and Related Dementias Risk Prediction: Algorithm Development and Validation Study

JMIR Aging 2024;7:e54748

DOI: 10.2196/54748

PMID: 38976869

PMCID: 11263893

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