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Accepted for/Published in: JMIR Medical Informatics

Date Submitted: Nov 27, 2023
Open Peer Review Period: Nov 27, 2023 - Jan 22, 2024
Date Accepted: Apr 5, 2024
(closed for review but you can still tweet)

The final, peer-reviewed published version of this preprint can be found here:

Data Lake, Data Warehouse, Datamart, and Feature Store: Their Contributions to the Complete Data Reuse Pipeline

Lamer A, Saint-Dizier C, Paris N, Chazard E

Data Lake, Data Warehouse, Datamart, and Feature Store: Their Contributions to the Complete Data Reuse Pipeline

JMIR Med Inform 2024;12:e54590

DOI: 10.2196/54590

PMID: 39037339

PMCID: 11267403

Data Lake, Data Warehouse, Datamart and Feature Store : A Viewpoint on their Contributions to the Complete Data Reuse Pipeline

  • Antoine Lamer; 
  • ChloĆ© Saint-Dizier; 
  • Nicolas Paris; 
  • Emmanuel Chazard

ABSTRACT

The growing adoption and utilization of health information technology has generated a wealth of clinical data in electronic format, offering opportunities for data reuse beyond direct patient care. However, as data are distributed across multiple software, it becomes challenging to cross-reference information between sources due to differences in formats, vocabularies, technologies, and the absence of common identifiers among software. To address these challenges, hospitals have adopted data warehouses to consolidate and standardize these data for research. Additionally, as a complement or alternative, data lakes store both source data and metadata in a detailed and unprocessed format, empowering exploration, manipulation, and adaptation of the data to meet specific analytical needs. Subsequently, datamarts are utilized to further refine data into usable information tailored to specific research questions. However, for efficient analysis, a feature store is essential to pivot and denormalize the data, simplifying queries. In conclusion, while data warehouses are crucial, data lakes, datamarts and feature stores play essential and complementary roles in facilitating data reuse for research and analysis in healthcare.


 Citation

Please cite as:

Lamer A, Saint-Dizier C, Paris N, Chazard E

Data Lake, Data Warehouse, Datamart, and Feature Store: Their Contributions to the Complete Data Reuse Pipeline

JMIR Med Inform 2024;12:e54590

DOI: 10.2196/54590

PMID: 39037339

PMCID: 11267403

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