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Accepted for/Published in: JMIR Formative Research

Date Submitted: Sep 4, 2023
Open Peer Review Period: Sep 4, 2023 - Oct 30, 2023
Date Accepted: Feb 2, 2024
(closed for review but you can still tweet)

The final, peer-reviewed published version of this preprint can be found here:

Automated Category and Trend Analysis of Scientific Articles on Ophthalmology Using Large Language Models: Development and Usability Study

Raja H, Munawar A, Mylonas N, Delsoz. M, Madadi Y, Elahi M, Hassan A, Abu Serhan H, Inam O, Hernandez L, Chen H, Tran S, Munir W, Abd-Alrazaq A, Yousefi. S

Automated Category and Trend Analysis of Scientific Articles on Ophthalmology Using Large Language Models: Development and Usability Study

JMIR Form Res 2024;8:e52462

DOI: 10.2196/52462

PMID: 38517457

PMCID: 10998173

Automated Category and Trend Analysis of Scientific Articles Using Large Language Models (LLMs): An Application in Ophthalmology

  • Hina Raja; 
  • Asim Munawar; 
  • Nikolaos Mylonas; 
  • Mohammad Delsoz.; 
  • Yeganeh Madadi; 
  • Mohammad Elahi; 
  • Amr Hassan; 
  • Hashem Abu Serhan; 
  • Onur Inam; 
  • Luis Hernandez; 
  • Hao Chen; 
  • Sang Tran; 
  • Wuqas Munir; 
  • Alaa Abd-Alrazaq; 
  • Siamak Yousefi.

ABSTRACT

Background:

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Objective:

In this paper, we present an automated method for article classification, leveraging the power of Large Language Models (LLM). The primary focus is on the field of ophthalmology, but the model is extendable to other fields.

Methods:

We have developed a model based on Natural Language Processing (NLP) techniques, including advanced LLMs, to process and analyze the textual content of scientific papers. Specifically, we have employed zero-shot learning (ZSL) LLM models and compared against Bidirectional and Auto-Regressive Transformers (BART) and its variants, and Bidirectional Encoder Representations from Transformers (BERT), and its variant such as distilBERT, SciBERT, PubmedBERT, BioBERT.

Results:

The classification results demonstrate the effectiveness of LLMs in categorizing the large number of ophthalmology papers without human intervention. To evaluate the LLMs, we compiled a dataset (RenD) of 1000 ocular disease-related articles, which were expertly annotated by a panel of six specialists into 15 distinct categories. The model achieved a mean accuracy of 0.86 and a mean F1 of 0.85 based on the RenD dataset.

Conclusions:

The proposed framework achieves notable improvements in both accuracy and efficiency. Its application in the domain of ophthalmology showcases its potential for knowledge organization and retrieval in other domains too. We performed trend analysis that enables the researchers and clinicians to easily categorize and retrieve relevant papers, saving time and effort in literature review and information gathering as well as identification of emerging scientific trends within different disciplines. Moreover, the extendibility of the model to other scientific fields broadens its impact in facilitating research and trend analysis across diverse disciplines.


 Citation

Please cite as:

Raja H, Munawar A, Mylonas N, Delsoz. M, Madadi Y, Elahi M, Hassan A, Abu Serhan H, Inam O, Hernandez L, Chen H, Tran S, Munir W, Abd-Alrazaq A, Yousefi. S

Automated Category and Trend Analysis of Scientific Articles on Ophthalmology Using Large Language Models: Development and Usability Study

JMIR Form Res 2024;8:e52462

DOI: 10.2196/52462

PMID: 38517457

PMCID: 10998173

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