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Accepted for/Published in: JMIR Public Health and Surveillance

Date Submitted: Jun 14, 2023
Date Accepted: Jul 23, 2024

The final, peer-reviewed published version of this preprint can be found here:

Spatiotemporal Cluster Detection for COVID-19 Outbreak Surveillance: Descriptive Analysis Study

Martonik R, Oleson C, Marder E

Spatiotemporal Cluster Detection for COVID-19 Outbreak Surveillance: Descriptive Analysis Study

JMIR Public Health Surveill 2024;10:e49871

DOI: 10.2196/49871

PMID: 39412839

PMCID: 11525083

Warning: This is an author submission that is not peer-reviewed or edited. Preprints - unless they show as "accepted" - should not be relied on to guide clinical practice or health-related behavior and should not be reported in news media as established information.

Community Level COVID-19 Outbreak Surveillance using Spatiotemporal Cluster Detection in Washington State, July–December 2021

  • Rachel Martonik; 
  • Caitlin Oleson; 
  • Ellyn Marder

ABSTRACT

Background:

During the peak of the winter 2020-21 surge, the number of weekly reported COVID-19 outbreaks in Washington State was 231 and the majority of these outbreaks were in high-priority settings. Local health jurisdictions (LHJs), which were primarily responsible for case and outbreak investigations, were overly burdened. Systematic cluster detection using real-time surveillance data could reduce this burden.

Objective:

To improve outbreak detection, the Washington State Department of Health initiated a systematic statewide cluster detection model to identify timely and actionable COVID-19 clusters for investigation and resource prioritization. This report details the implementation of the model using SaTScan, along with an assessment of the tool’s effectiveness.

Methods:

Six LHJs participated in a pilot before statewide implementation in August 2021. Clusters during July 17–December 17, 2021 were analyzed by LHJ population size and incidence. Clusters were matched to reported outbreaks and compared by setting

Results:

A weekly, LHJ-specific retrospective space-time permutation model identified 2874 new clusters. The median cluster size was 15 cases and the median number of clusters was 4. Nearly 60% of clusters were timely (ending within one week before the analysis). There were 2874 reported outbreaks during this same time period; 363 (12.8%) matched to ≥1 cluster. The most frequent settings among reported and matched outbreaks were schools and youth programs (28.7%, 29.8%), workplaces (21.5%, 15.4%), and long-term care facilities (18.8%, 27.3%). Settings with the highest percentage matching were community settings (22.2%) and congregate housing (20.8%). Approximately one-third (32.8%) of matched outbreaks had all cases linked after the cluster was identified.

Conclusions:

Our goal was to routinely and systematically identify timely and actionable COVID-19 clusters throughout the state. Regardless of population or incidence, the model identified reasonably sized, timely clusters statewide, successfully meeting the goals. Among some high priority settings subject to public health interventions throughout the pandemic, such as schools and community settings, the model identified clusters which were matched to reported outbreaks. In workplaces, another high priority setting, results suggest the SaTScan model might be able to identify outbreaks sooner than existing outbreak detection methods.


 Citation

Please cite as:

Martonik R, Oleson C, Marder E

Spatiotemporal Cluster Detection for COVID-19 Outbreak Surveillance: Descriptive Analysis Study

JMIR Public Health Surveill 2024;10:e49871

DOI: 10.2196/49871

PMID: 39412839

PMCID: 11525083

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