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Accepted for/Published in: JMIR Public Health and Surveillance

Date Submitted: Jun 9, 2023
Open Peer Review Period: Jun 9, 2023 - Jun 23, 2023
Date Accepted: May 26, 2024
(closed for review but you can still tweet)

The final, peer-reviewed published version of this preprint can be found here:

Development of Interoperable Computable Phenotype Algorithms for Adverse Events of Special Interest to Be Used for Biologics Safety Surveillance: Validation Study

Holdefer A, Pizarro J, Saunders-Hastings P, Beers J, Sang A, Hettinger AZ, Blumenthal HJ, Martinez E, Jones LD, Deady M, Ezzeldin H, Anderson S

Development of Interoperable Computable Phenotype Algorithms for Adverse Events of Special Interest to Be Used for Biologics Safety Surveillance: Validation Study

JMIR Public Health Surveill 2024;10:e49811

DOI: 10.2196/49811

PMID: 39008361

PMCID: 11287092

Warning: This is an author submission that is not peer-reviewed or edited. Preprints - unless they show as "accepted" - should not be relied on to guide clinical practice or health-related behavior and should not be reported in news media as established information.

Development of Interoperable Computable Phenotype Algorithms for Adverse Events of Special Interest to Be Used for Biologics Safety Surveillance: Validation Study

  • Ashley Holdefer; 
  • Jeno Pizarro; 
  • Patrick Saunders-Hastings; 
  • Jeffrey Beers; 
  • Arianna Sang; 
  • Aaron Zachary Hettinger; 
  • H. Joseph Blumenthal; 
  • Erik Martinez; 
  • Lance Daniel Jones; 
  • Matthew Deady; 
  • Hussein Ezzeldin; 
  • Steven Anderson

ABSTRACT

Background:

Adverse events (AEs) associated with vaccination have been evaluated by epidemiological studies, and more recently gained additional attention with the Emergency Use Authorization (EUA) of several COVID-19 vaccines. As part of its responsibility to conduct post-market surveillance, the U.S. Food and Drug Administration (FDA) continues to monitor several adverse events of special interest (AESIs) to ensure vaccine safety, including for COVID-19.

Objective:

This study is part of the Biologics Effectiveness and Safety (BEST) Initiative, which aims to improve FDA’s post-market surveillance capabilities while minimizing public burden. This study looks to enhance active surveillance efforts through a rules-based, computable phenotype algorithm to identify five AESIs: anaphylaxis, Guillain-Barré syndrome (GBS), myocarditis/pericarditis, thrombosis with thrombocytopenia syndrome (TTS), and febrile seizure. AESI phenotype algorithms can be developed to apply to electronic health record (EHR) data at health provider organizations across the country by querying for standard and interoperable codes. The codes queried in the rules represent symptoms, diagnoses, or treatments of the AESI sourced from published case definitions and input from clinicians.

Methods:

To validate the performance of the algorithms, we applied them to EHR data from a United States academic health system and clinicians evaluated a sample of cases. Performance was assessed using positive predictive value (PPV).

Results:

Our anaphylaxis algorithm was the best performing, having a PPV of 93.3%. The PPVs for our febrile seizure, myocarditis/pericarditis, TTS, and GBS algorithms were 89.0%, 83.5%, 70.2%, and 47.2%, respectively.

Conclusions:

Given our algorithm design and performance, our results support continued research into using interoperable algorithms for widespread AESI post-market detection.


 Citation

Please cite as:

Holdefer A, Pizarro J, Saunders-Hastings P, Beers J, Sang A, Hettinger AZ, Blumenthal HJ, Martinez E, Jones LD, Deady M, Ezzeldin H, Anderson S

Development of Interoperable Computable Phenotype Algorithms for Adverse Events of Special Interest to Be Used for Biologics Safety Surveillance: Validation Study

JMIR Public Health Surveill 2024;10:e49811

DOI: 10.2196/49811

PMID: 39008361

PMCID: 11287092

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