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Accepted for/Published in: JMIR Cancer

Date Submitted: Apr 26, 2022
Open Peer Review Period: Apr 25, 2022 - Jun 20, 2022
Date Accepted: Jun 20, 2022
(closed for review but you can still tweet)

The final, peer-reviewed published version of this preprint can be found here:

Exploring the Association of Cancer and Depression in Electronic Health Records: Combining Encoded Diagnosis and Mining Free-Text Clinical Notes

Leis A, Casadevall D, Albanell J, Posso M, Macià F, Castells X, Ramírez-Anguita JM, Martínez Roldán J, Furlong LI, Sanz F, Ronzano F, Mayer MA

Exploring the Association of Cancer and Depression in Electronic Health Records: Combining Encoded Diagnosis and Mining Free-Text Clinical Notes

JMIR Cancer 2022;8(3):e39003

DOI: 10.2196/39003

PMID: 35816382

PMCID: 9315897

Exploring the Association of Cancer and Depression in Electronic Health Records: Combining Encoded Diagnosis and Mining Free Text Clinical Notes

  • Angela Leis; 
  • David Casadevall; 
  • Joan Albanell; 
  • Margarita Posso; 
  • Francesc Macià; 
  • Xavier Castells; 
  • Juan Manuel Ramírez-Anguita; 
  • Jordi Martínez Roldán; 
  • Laura I. Furlong; 
  • Ferran Sanz; 
  • Francesco Ronzano; 
  • Miguel A. Mayer

ABSTRACT

Background:

A cancer diagnosis is a source of psychological and emotional stress, which are often maintained for sustained periods of time that may lead to depressive disorders. Depression is one of the most common psychological conditions in patients with cancer.

Objective:

The main objectives of this study were to compare the prevalence of depression in patients before and after the diagnosis of breast or colorectal cancer, as well as to assess the usefulness of the analysis of free-text clinical notes in two languages (Spanish or Catalan) for detecting depression in combination with encoded diagnoses.

Methods:

We carried out an analysis of the electronic health records from a general hospital by considering different sources of clinical information related to depression. This included ICD-9-CM diagnosis codes and structured information extracted by mining free-text clinical notes via Natural Language Processing (NLP) tools based on SNOMED-CT, mentioning symptoms and drugs used for the treatment of depression.

Results:

We observed that the percentage of patients diagnosed with depressive disorders significantly increased after cancer diagnosis in the two types of cancer considered. We managed to identify a higher number of patients with depression by mining free-text clinical notes when compared to the group selected exclusively on ICD-9-CM codes, increasing the number of patients diagnosed with depression by 34.7% (441/1269).

Conclusions:

This study provides new clinical evidence of the depression-cancer comorbidity and supporting the use of NLP for processing free-text clinical notes from electronic health records (EHR), contributing to the identification of additional clinical data that complements those provided by coded data improving the management of patients.


 Citation

Please cite as:

Leis A, Casadevall D, Albanell J, Posso M, Macià F, Castells X, Ramírez-Anguita JM, Martínez Roldán J, Furlong LI, Sanz F, Ronzano F, Mayer MA

Exploring the Association of Cancer and Depression in Electronic Health Records: Combining Encoded Diagnosis and Mining Free-Text Clinical Notes

JMIR Cancer 2022;8(3):e39003

DOI: 10.2196/39003

PMID: 35816382

PMCID: 9315897

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