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Accepted for/Published in: JMIR Medical Informatics

Date Submitted: Feb 14, 2022
Date Accepted: Jul 31, 2022

The final, peer-reviewed published version of this preprint can be found here:

Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study

Reifs D, Reig-Bolaño R, Casals-Zorita M, Grau-Carrion S

Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study

JMIR Med Inform 2022;10(8):e37284

DOI: 10.2196/37284

PMID: 35994311

PMCID: 9446137

Warning: This is an author submission that is not peer-reviewed or edited. Preprints - unless they show as "accepted" - should not be relied on to guide clinical practice or health-related behavior and should not be reported in news media as established information.

Medical image labeling for CNN training dataset

  • David Reifs; 
  • Ramon Reig-Bolaño; 
  • Marta Casals-Zorita; 
  • Sergi Grau-Carrion

ABSTRACT

Background:

Chronic ulcers are usually the result of prolonged pressure on the skin and underlying tissues. The assessment and treatment of wounds require an accurate analysis of their physical characteristics. In most cases, the methods of analysis used nowadays are rudimentary, which leads to errors and the use of invasive and uncomfortable techniques for patients. There are many studies that include a Convolutional Neural Network for classify the different tissues in a wound. In order to obtain good results the network has to be trained with a correctly labeled data set by a professional expert in wound assessment. Typically, it is a hard work to labelling pixel by pixel using a professional photo editor software. It needs a long time and effort by health professional.

Objective:

The main goal is implementing a new fast and accurate method of labelling wound samples for training a neural network to classify different tissues.

Methods:

Developing a support tool and evaluate the accuracy and reliability. Compare the support tool classification with a digital gold standard.

Results:

To evaluate this new method, it has been taken as reference the gold standard for labeling image segmentation data. In that case, labeling the data with an image edition software. The obtained average ratio of each tissue type are 0.3759 for no skin, 0. 5935 for healty skin, 0. 0178 for granular and 0.0110 and 0.0001 for base and necrotic.

Conclusions:

This method increases tagging speed an average compared to an advanced image editing user. This gain is bigger with untrained users. The samples obtained with the new system are indistinguishable from the samples made with the gold standard.


 Citation

Please cite as:

Reifs D, Reig-Bolaño R, Casals-Zorita M, Grau-Carrion S

Interactive Medical Image Labeling Tool to Construct a Robust Convolutional Neural Network Training Data Set: Development and Validation Study

JMIR Med Inform 2022;10(8):e37284

DOI: 10.2196/37284

PMID: 35994311

PMCID: 9446137

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