Maintenance Notice

Due to necessary scheduled maintenance, the JMIR Publications website will be unavailable from Wednesday, July 01, 2020 at 8:00 PM to 10:00 PM EST. We apologize in advance for any inconvenience this may cause you.

Who will be affected?

Accepted for/Published in: Journal of Medical Internet Research

Date Submitted: Feb 19, 2021
Date Accepted: Aug 7, 2021

The final, peer-reviewed published version of this preprint can be found here:

Detecting Parkinson Disease Using a Web-Based Speech Task: Observational Study

Rahman W, Lee S, Islam MS, Antony VN, Ratnu H, Ali MR, Mamun AA, Wagner E, Jensen-Roberts S, Waddell E, Myers T, Pawlik M, Soto J, Coffey M, Sarkar A, Schneider R, Tarolli C, Lizarraga K, Adams J, Little MA, Dorsey R, Hoque E

Detecting Parkinson Disease Using a Web-Based Speech Task: Observational Study

J Med Internet Res 2021;23(10):e26305

DOI: 10.2196/26305

PMID: 34665148

PMCID: 8564663

Detecting Parkinson’s Disease from an Online Speech-task: Observational Study

  • Wasifur Rahman; 
  • Sangwu Lee; 
  • Md. Saiful Islam; 
  • Victor Nikhil Antony; 
  • Harshil Ratnu; 
  • Mohammad Rafayet Ali; 
  • Abdullah Al Mamun; 
  • Ellen Wagner; 
  • Stella Jensen-Roberts; 
  • Emma Waddell; 
  • Taylor Myers; 
  • Meghan Pawlik; 
  • Julia Soto; 
  • Madeleine Coffey; 
  • Aayush Sarkar; 
  • Ruth Schneider; 
  • Christopher Tarolli; 
  • Karlo Lizarraga; 
  • Jamie Adams; 
  • Max A. Little; 
  • Ray Dorsey; 
  • Ehsan Hoque

ABSTRACT

Background:

Access to neurological care for Parkinson's disease (PD) is a rare privilege for millions of people worldwide, especially in developing countries. In 2013, there were just 1200 neurologists in India for a population of 1.3 billion; the average population per neurologist exceeds 3.3 million in Africa. On the other hand, 60,000 people are diagnosed with Parkinson's disease (PD) every year in the US alone, and similar patterns of rising PD cases — fueled mostly by environmental pollution and an aging population can be seen worldwide. The current projection of more than 12 million PD patients worldwide by 2040 is only part of the picture since more than 20% of PD patients remain undiagnosed. Timely diagnosis and frequent assessment are keys to ensure timely and appropriate medical intervention, improving the quality of life for a PD patient.

Objective:

In this paper, we envision a web-based framework that can help anyone, anywhere around the world record a short speech task, and analyze the recorded data to screen for Parkinson’s disease (PD).

Methods:

We collected data from 726 unique participants (262 PD, 38% female; 464 non-PD, 65% female; average age: 61) – from all over the US and beyond. A small portion of the data (roughly 7%) was collected in a lab setting to compare the performance of the models trained with noisy, home environment data against high-quality lab environment data. The participants were instructed to utter a popular pangram containing all the letters in the English alphabet “the quick brown fox jumps over the lazy dog”. We extracted both standard acoustic features (Mel Frequency Cepstral Coefficients (MFCC), jitter and shimmer variants) and deep learning-based features from the speech data. Using these features, we trained several machine learning algorithms. We also applied model interpretation techniques like SHAP (SHapley Additive exPlanations) to find out the importance of each feature in determining the model’s output.

Results:

We achieved 0.75 AUC (Area Under the Curve) performance on determining presence of self-reported Parkinson’s disease by modeling the standard acoustic features through the XGBoost – a gradient-boosted decision tree model. Further analysis reveals that the widely used MFCC features and a subset of previously validated dysphonia features designed for detecting Parkinson’s from verbal phonation task (pronouncing ‘ahh’) influence the model’s decision most.

Conclusions:

Our model performed equally well on data collected in controlled lab environment as well as ‘in the wild’ across different gender and age groups. Using this tool, we can collect data from almost anyone anywhere with a video/audio enabled device, and help the participants to screen for Parkinson’s disease remotely, contributing to equity and access in neurological care.


 Citation

Please cite as:

Rahman W, Lee S, Islam MS, Antony VN, Ratnu H, Ali MR, Mamun AA, Wagner E, Jensen-Roberts S, Waddell E, Myers T, Pawlik M, Soto J, Coffey M, Sarkar A, Schneider R, Tarolli C, Lizarraga K, Adams J, Little MA, Dorsey R, Hoque E

Detecting Parkinson Disease Using a Web-Based Speech Task: Observational Study

J Med Internet Res 2021;23(10):e26305

DOI: 10.2196/26305

PMID: 34665148

PMCID: 8564663

Download PDF


Request queued. Please wait while the file is being generated. It may take some time.

© The authors. All rights reserved. This is a privileged document currently under peer-review/community review (or an accepted/rejected manuscript). Authors have provided JMIR Publications with an exclusive license to publish this preprint on it's website for review and ahead-of-print citation purposes only. While the final peer-reviewed paper may be licensed under a cc-by license on publication, at this stage authors and publisher expressively prohibit redistribution of this draft paper other than for review purposes.