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Accepted for/Published in: Journal of Medical Internet Research

Date Submitted: Nov 12, 2020
Date Accepted: Apr 3, 2021
Date Submitted to PubMed: Apr 9, 2021

The final, peer-reviewed published version of this preprint can be found here:

Using a Secure, Continually Updating, Web Source Processing Pipeline to Support the Real-Time Data Synthesis and Analysis of Scientific Literature: Development and Validation Study

Serban O, Vaghela U, Rabinowicz S, Bratsos P, Martin G, Fritzilas E, Markar S, Purkayastha S, Stringer K, Llewellyn C, Singh H, Dutta D, Clarke JM, Howard M, PanSurg REDASA Curators , Kinross J

Using a Secure, Continually Updating, Web Source Processing Pipeline to Support the Real-Time Data Synthesis and Analysis of Scientific Literature: Development and Validation Study

J Med Internet Res 2021;23(5):e25714

DOI: 10.2196/25714

PMID: 33835932

PMCID: 8104004

REDASA: A Secure Continually Updating Web-Source Processing Pipeline supporting a REaltime DAta Synthesis and Analysis of Scientific Literature

  • Ovidiu Serban; 
  • Uddhav Vaghela; 
  • Simon Rabinowicz; 
  • Paris Bratsos; 
  • Guy Martin; 
  • Epameinondas Fritzilas; 
  • Sheraz Markar; 
  • Sanjay Purkayastha; 
  • Karl Stringer; 
  • Charlie Llewellyn; 
  • Harshdeep Singh; 
  • Debabrata Dutta; 
  • Jonathan M Clarke; 
  • Matthew Howard; 
  • PanSurg REDASA Curators; 
  • James Kinross

ABSTRACT

Background:

The scale and quality of the global scientific response to COVID-19 has unquestionably saved lives. However, COVID-19 has also triggered an unprecedented “infodemic”; the velocity and volume of data production has overwhelmed many key stakeholders such as clinicians and policy makers who have been unable to process structured and unstructured data for evidence-based decision making.

Objective:

Current solutions aiming to alleviate this multi-disciplinary data synthesis challenge and minimise the deleterious impact of misinformation, are unable to capture heterogeneous web data in “real-time” for the production of contemporaneous answers and are not based on the identification and interpretation of high quality information in response to a freetext query.

Methods:

To realise an infrastructure that can addresses these shortcomings, the PanSurg Collaborative at Imperial College London has developed a unique data pipeline based on a webcrawl methodology.

Results:

REDASA is now one of the world’s largest and most contemporaneous COVID-19 evidence sources consisting of 104,000 documents and counting. This data pipeline converges with a novel curation methodology that adopts a “human in the loop” methodology for the characterisation of quality, relevance and key evidence across a range of scientific literature sources. By capturing curator’s critical appraisal methodology as discrete labels and rating information, REDASA has rapidly developed a foundational data science dataset of over 1400 articles in the COVID-19 problem space; that represents ∼10% of the papers written worldwide on COVID-19 in under 2 weeks.

Conclusions:

This dataset can act as ground-truth for future implementation of live, automated systematic review.


 Citation

Please cite as:

Serban O, Vaghela U, Rabinowicz S, Bratsos P, Martin G, Fritzilas E, Markar S, Purkayastha S, Stringer K, Llewellyn C, Singh H, Dutta D, Clarke JM, Howard M, PanSurg REDASA Curators , Kinross J

Using a Secure, Continually Updating, Web Source Processing Pipeline to Support the Real-Time Data Synthesis and Analysis of Scientific Literature: Development and Validation Study

J Med Internet Res 2021;23(5):e25714

DOI: 10.2196/25714

PMID: 33835932

PMCID: 8104004

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