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Accepted for/Published in: JMIR Medical Informatics

Date Submitted: Apr 24, 2020
Date Accepted: Jul 22, 2020

The final, peer-reviewed published version of this preprint can be found here:

Amplifying Domain Expertise in Clinical Data Pipelines

Rahman P, Nandi A, Hebert C

Amplifying Domain Expertise in Clinical Data Pipelines

JMIR Med Inform 2020;8(11):e19612

DOI: 10.2196/19612

PMID: 33151150

PMCID: 7677017

Amplifying Domain Expertise in Clinical Data Pipelines

  • Protiva Rahman; 
  • Arnab Nandi; 
  • Courtney Hebert

ABSTRACT

Digitization of health records has allowed the healthcare domain to adopt data-driven algorithms for decision support. There are multiple people involved in this process: a data engineer who processes and restructures the data, a data scientist who develops statistical models, and a domain expert who informs the design of the data pipeline and consumes its results for decision support. While there are multiple data interaction tools for data scientists, few exist to allow domain experts to interact meaningfully with data. Designing systems for domain experts requires careful thought because they have different needs and characteristics from other end-users. There should be an increased emphasis on the system to optimize the experts’ interaction by directing them to high impact data tasks and reducing the total task completion time. We refer to this optimization as amplifying domain expertise. While there is active research in making machine learning models more explainable and usable, they focus on the final outputs of the model. However, in the clinical domain, expert involvement is needed at every pipeline step: curation, cleaning, and finally, analysis. To this end, we review literature from the database, human-computer information, and visualization communities to demonstrate challenges and solutions at each of the data pipeline stages. We then present a taxonomy of amplifying expertise, which can be applied when building systems for domain experts. This includes summarization, guidance, interaction, and acceleration. Finally, we demonstrate the use of our taxonomy with a case study.


 Citation

Please cite as:

Rahman P, Nandi A, Hebert C

Amplifying Domain Expertise in Clinical Data Pipelines

JMIR Med Inform 2020;8(11):e19612

DOI: 10.2196/19612

PMID: 33151150

PMCID: 7677017

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