Maintenance Notice

Due to necessary scheduled maintenance, the JMIR Publications website will be unavailable from Wednesday, July 01, 2020 at 8:00 PM to 10:00 PM EST. We apologize in advance for any inconvenience this may cause you.

Who will be affected?

Accepted for/Published in: Journal of Medical Internet Research

Date Submitted: Apr 30, 2024
Date Accepted: Nov 15, 2024

The final, peer-reviewed published version of this preprint can be found here:

Generative AI Models in Time-Varying Biomedical Data: Scoping Review

He RY, Sarwal V, Qiu X, Zhuang Y, Zhang L, Liu Y, Chiang JN

Generative AI Models in Time-Varying Biomedical Data: Scoping Review

J Med Internet Res 2025;27:e59792

DOI: 10.2196/59792

PMID: 40063929

PMCID: 11933772

Warning: This is an author submission that is not peer-reviewed or edited. Preprints - unless they show as "accepted" - should not be relied on to guide clinical practice or health-related behavior and should not be reported in news media as established information.

Generative AI models in time varying biomedical data: a systematic review

  • Rosemary Yuan He; 
  • Varuni Sarwal; 
  • Xinru Qiu; 
  • Yongwen Zhuang; 
  • Le Zhang; 
  • Yue Liu; 
  • Jeffery N Chiang

ABSTRACT

Background:

Trajectory modeling is a longstanding challenge in the application of computational methods to healthcare. However, traditional statistical and machine learning methods do not achieve satisfactory results as they often fail to capture the complex underlying distributions of multi-modal health data, and long-term dependencies throughout patients’ medical histories. Recent advances in generative AI have provided powerful tools to represent complex distributions and patterns with minimal underlying assumptions. These have had a major impact in fields such as finance and environmental sciences, and recently researchers have turned to these methods for disease modeling.

Objective:

While AI methods have proven powerful, their application in clinical practice remains limited due to their black-box like nature. The proliferation of AI algorithms poses a significant challenge for non-developers to track and incorporate these advances into clinical research and application. In this work, we survey peer-reviewed, generative AI model papers with specific applications in time series health data.

Methods:

Our search includes single- and multi-modal generative AI models that operate over structured and unstructured data, medical imaging or multi-omics data. We introduce current generative AI methods, review their applications in each data modality and discuss their strengths and weaknesses compared to traditional methods.

Results:

We follow the PRISMA guideline and review 155 articles on generative AI applications in time series healthcare data across modalities. Furthermore, we offer a systematic framework for clinicians to easily identify suitable AI methods for their data and task at hand.

Conclusions:

We review and critique existing applications of generative AI to time series health data with the aim of bridging the gap between computational methods and clinical application. We also identify shortcomings of existing approaches, and highlight recent advances in generative AI that represent promising directions for healthcare modeling.


 Citation

Please cite as:

He RY, Sarwal V, Qiu X, Zhuang Y, Zhang L, Liu Y, Chiang JN

Generative AI Models in Time-Varying Biomedical Data: Scoping Review

J Med Internet Res 2025;27:e59792

DOI: 10.2196/59792

PMID: 40063929

PMCID: 11933772

Download PDF


Request queued. Please wait while the file is being generated. It may take some time.

© The authors. All rights reserved. This is a privileged document currently under peer-review/community review (or an accepted/rejected manuscript). Authors have provided JMIR Publications with an exclusive license to publish this preprint on it's website for review and ahead-of-print citation purposes only. While the final peer-reviewed paper may be licensed under a cc-by license on publication, at this stage authors and publisher expressively prohibit redistribution of this draft paper other than for review purposes.