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Accepted for/Published in: JMIR Medical Informatics

Date Submitted: Jan 13, 2024
Date Accepted: Sep 11, 2024

The final, peer-reviewed published version of this preprint can be found here:

Application of Spatial Analysis on Electronic Health Records to Characterize Patient Phenotypes: Systematic Review

Mollalo A, Hamidi B, Lenert LA, Alekseyenko AV

Application of Spatial Analysis on Electronic Health Records to Characterize Patient Phenotypes: Systematic Review

JMIR Med Inform 2024;12:e56343

DOI: 10.2196/56343

PMID: 39405525

PMCID: 11522649

Application of Spatial Analysis for Electronic Health Records: Characterizing Patient Phenotypes and Emerging Trends

  • Abolfazl Mollalo; 
  • Bashir Hamidi; 
  • Leslie A. Lenert; 
  • Alexander V. Alekseyenko

ABSTRACT

Background:

Electronic health records (EHR) commonly contain patient addresses that provide valuable data for geocoding and spatial analysis, enabling more comprehensive descriptions of individual patients for clinical purposes. Despite the widespread use of EHR in clinical decision support and interventions, no systematic review has examined the extent to which spatial analysis is used to characterize patient phenotypes.

Objective:

This study reviews advanced spatial analyses that employed individual-level health data from EHR within the US to characterize patient phenotypes.

Methods:

We systematically evaluated English-language peer-reviewed articles from PubMed/MEDLINE, Scopus, Web of Science, and Google Scholar databases from inception to August 20, 2023, without imposing constraints on study design or specific health domains.

Results:

A significant number of studies—322 out of the 375 full-text reviewed—were limited to geocoding or basic mapping without implementing advanced spatial statistical analysis, leaving only 49 articles that met the eligibility criteria. These articles utilized diverse spatial methods, with a predominant focus on clustering techniques, while spatiotemporal analysis (frequentist and Bayesian) and modeling were less common. A noteworthy surge (n = 42, 85.7%) in publications was observed post-2017. The publications investigated a variety of adult and pediatric clinical areas, including infectious disease, endocrinology, and cardiology, using phenotypes defined over a range of data domains, such as demographics, diagnoses, and visits. The primary health outcomes investigated were asthma, hypertension, and diabetes. Notably, patient phenotypes involving genomics, imaging, and notes were limited.

Conclusions:

This review underscores the growing interest in spatial analysis of EHR-derived data and highlights knowledge gaps in clinical health, phenotype domains, and spatial methodologies We suggest that future research should focus on addressing these gaps and harnessing spatial analysis to enhance individual patient contexts and clinical decision support.


 Citation

Please cite as:

Mollalo A, Hamidi B, Lenert LA, Alekseyenko AV

Application of Spatial Analysis on Electronic Health Records to Characterize Patient Phenotypes: Systematic Review

JMIR Med Inform 2024;12:e56343

DOI: 10.2196/56343

PMID: 39405525

PMCID: 11522649

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