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Accepted for/Published in: JMIR Public Health and Surveillance

Date Submitted: Sep 14, 2021
Open Peer Review Period: Sep 14, 2021 - Sep 28, 2021
Date Accepted: Oct 5, 2021
Date Submitted to PubMed: Nov 23, 2021
(closed for review but you can still tweet)

The final, peer-reviewed published version of this preprint can be found here:

Digital SARS-CoV-2 Detection Among Hospital Employees: Participatory Surveillance Study

Leal-Neto O, Egger T, Schlegel M, Flury D, Summer J, Albrich W, Flury BB, Kuster S, Vernazza P, Kahlert C, Kohler P

Digital SARS-CoV-2 Detection Among Hospital Employees: Participatory Surveillance Study

JMIR Public Health Surveill 2021;7(11):e33576

DOI: 10.2196/33576

PMID: 34727046

PMCID: 8610449

Warning: This is an author submission that is not peer-reviewed or edited. Preprints - unless they show as "accepted" - should not be relied on to guide clinical practice or health-related behavior and should not be reported in news media as established information.

Digital SARS-CoV-2 detection among hospital employees: A Participatory Surveillance study.

  • Onicio Leal-Neto; 
  • Thomas Egger; 
  • Matthias Schlegel; 
  • Domenica Flury; 
  • Johannes Summer; 
  • Werner Albrich; 
  • Baharak Babouee Flury; 
  • Stefan Kuster; 
  • Pietro Vernazza; 
  • Christian Kahlert; 
  • Philipp Kohler

ABSTRACT

Background:

The implementation of novel techniques represents an additional opportunity for the rapid analysis acting as a complement to the traditional disease surveillance systems.

Objective:

The objective of this work is to describe a web-based participatory surveillance strategy among healthcare workers (HCW) in two Swiss hospitals during the first wave of COVID-19.

Methods:

A prospective cohort of HCW was initiated in March 2020 at the Cantonal Hospital of St. Gallen and the Eastern Switzerland Children’s Hospital. For data analysis, we used a combination of the following techniques: loess regression, spearman correlation, anomaly detection and random forest.

Results:

From March 23rd to August 23rd 2020, 127,684 SMS were sent generating 90,414 valid reports among 1,004 participants, achieving a weekly average of 4.5 reports per user (SD 1.9). The symptom showing the strongest correlation with a positive PCR result was loss of taste. Symptoms like red eyes or runny nose were negatively associated with a positive test. The area under the ROC curve showed favorable performance of the classification tree, with an accuracy of 88% for the training and 89% for the test data. Nevertheless, while the prediction matrix showed good specificity (80.0%), sensitivity was low at 10.6%. Loss of taste was the symptom which paralleled best with COVID-19 activity on the population level. On the resident level, using machine-learning based random forest classification, reporting of loss of taste and limb/muscle pain, as well as absence of runny nose and red eyes were the best predictors of COVID-19.

Conclusions:

Nevertheless, we deem the presented surveillance tool highly useful in monitoring and predicting COVID-19 activity among our HCW.


 Citation

Please cite as:

Leal-Neto O, Egger T, Schlegel M, Flury D, Summer J, Albrich W, Flury BB, Kuster S, Vernazza P, Kahlert C, Kohler P

Digital SARS-CoV-2 Detection Among Hospital Employees: Participatory Surveillance Study

JMIR Public Health Surveill 2021;7(11):e33576

DOI: 10.2196/33576

PMID: 34727046

PMCID: 8610449

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