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Yu Y, Ruddy K, Mansfield A, Zong N, Wen A, Tsuji S, Huang M, Liu H, Shah N, Jiang G
Detecting and Filtering Immune-Related Adverse Events Signal Based on Text Mining and Observational Health Data Sciences and Informatics Common Data Model: Framework Development Study
Developing A Framework for Detecting and Filtering Immune-related Adverse Events Signal Based on OHDSI Common Data Model and Text Mining
Yue Yu;
Kathryn Ruddy;
Aaron Mansfield;
Nansu Zong;
Andrew Wen;
Shintaro Tsuji;
Ming Huang;
Hongfang Liu;
Nilay Shah;
Guoqian Jiang
ABSTRACT
Background:
Immune checkpoint inhibitors are associated with unique immune-related adverse events (irAEs). Because most of the immune checkpoint inhibitors are new to the market, it is important to conduct studies using real-world data sources to investigate their safety profiles.
Objective:
To develop a framework for signal detection and filtration of novel immune-related adverse events (irAEs) for 6 FDA approved immune checkpoint inhibitors.
Methods:
In our framework, we first used the FDA Adverse Event Reporting System (FAERS) standardized in an OHDSI common data model (CDM) to collect immune checkpoint inhibitors-related event data and conducted the irAE signal detection. We then filtered those already known irAEs from drug labels and literatures by using a customized text-mining pipeline based on cTAKES with MedDRA as a dictionary. Finally, we classified the irAE detection results into three different categories to discover potentially new irAE signals.
Results:
By our text-mining pipeline, 490 irAE terms were identified from drug labels and and 918 terms were identified from literature. In addition, of the 94 positive signals detected using CDM-based FAERS, 53 signals (56.38%) were labeled signals, 10 (10.64%) were unlabeled published signals, and 31 (32.98%) were potentially new signals.
Conclusions:
We demonstrated that our approach is effective in irAE signal detection and filtration. Moreover, our framework could facilitate ADE detection and filtration toward the goal of next generation pharmacovigilance.
Citation
Please cite as:
Yu Y, Ruddy K, Mansfield A, Zong N, Wen A, Tsuji S, Huang M, Liu H, Shah N, Jiang G
Detecting and Filtering Immune-Related Adverse Events Signal Based on Text Mining and Observational Health Data Sciences and Informatics Common Data Model: Framework Development Study